The talk will present the results of Larisa’s collaboration with the Jozef Stefan Institute in Ljubljana, focusing on her recent visit. These include in the first place OntoDM, an ontology of data mining, developed at JSI. The use cases of OntoDM include QSAR modeling for drug design, which connects OntoDM with DDI, the ontology for drug design investigations developed in Aberystwyth. Finally, she will discuss recent preliminary investigations into ontologies for modeling dynamic systems undertaken jointly, which have led to some directions for developing the next generation of the Systems Biology Ontology. She will conclude by presenting her vision of the Ontology of Science.